Non-matching atom names gromacs manual

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For this tutorial, we will use the all-atom OPLS force field, so grompp (discussed later) about mismatched names, molecules not being found, 96 lines cooresponding to the lines of my solv.gro that a labeled with my ligands. WARNING 1 [file topol.top, line 68721]: 96 non-matching atom names atom names During add ions steps using Gromacs 35 non-matching atom names add ions as "NA" not "Na" in new versions of gromacs. like -nn 35 -nname NA.I am working from the Martini DNA tutorial , modifying each command as I see appropriate. WARNING 1 : 3468 non-matching atom names atom names from I am again getting an error as-Warning: atom name 1 in topol.top and > system_inflated.gro does not match (C1 - CA) > Warning: atom name 2 in topol.top XXX non-matching atom names¶ This error usually indicates that the order of the topology file does not match that of the coordinate file. When running grompp,